Here is the association table of sample names and conditions, colored with respect to condition color used in figures.

File.names Conditions
SCV096 EGFP
SCV097 mCherry
SCV098 EGFP+mCherry_EGFP_Sig
SCV099 EGFP+mCherry_mCherry_Sig

The Aim of Distriburion Analysis

This part of document includes figures representing the distribution of labels associated with samples. Can give idea about percentage distributions of classes (like: “no signal”, “infection”, “infection&lysis”) and distribution of problematic samples (like: “dirt”, “dried out”, “multiple infections”)

Distibutions

Here once more the figures side by side

Distribution of DDOM

The Aim of Single Variable Analysis

This part of document includes single variable figures associated with samples. We focus on 5 parameters: maximum, shape, midpoint, infection time, start point. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases.

For each figure we include tables showing p-values from t.test, Mann-Whitney U Test (wilcox.test), ,ean differences between conditions and the effect size. The tables also show the sample size for each condition.

Maximum

ttest. adjusted p values

Maximum Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 1.00000 0.29954 444
mCherry 0.00000 1.00000 0.00000 0.00000 292
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.06208 592
EGFP+mCherry_mCherry_Sig 0.29954 0.00000 0.06208 1.00000 481
numSamples 444 292 592 481

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.24076 0.03490 444
mCherry 0.00000 1.00000 0.00000 0.00000 292
EGFP+mCherry_EGFP_Sig 0.24076 0.00000 1.00000 0.44345 592
EGFP+mCherry_mCherry_Sig 0.03490 0.00000 0.44345 1.00000 481
numSamples 444 292 592 481

Diffrence between means

Maximum Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.95501 0.04117 0.12971 444
mCherry 0.95501 0.00000 0.99618 0.82529 292
EGFP+mCherry_EGFP_Sig 0.04117 0.99618 0.00000 0.17088 592
EGFP+mCherry_mCherry_Sig 0.12971 0.82529 0.17088 0.00000 481
numSamples 444 292 592 481

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 3.403e-01 4.186e-01 2.880e-01 3.243e-01 444
mCherry 4.186e-01 4.969e-01 3.661e-01 4.026e-01 292
EGFP+mCherry_EGFP_Sig 2.880e-01 3.661e-01 2.354e-01 2.720e-01 592
EGFP+mCherry_mCherry_Sig 3.243e-01 4.026e-01 2.720e-01 3.084e-01 481
numSamples 444 292 592 481

ttest. adjusted p values

Maximum Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.80712 1.00000 350
mCherry 0.00000 1.00000 0.00000 0.00000 177
EGFP+mCherry_EGFP_Sig 0.80712 0.00000 1.00000 0.50075 437
EGFP+mCherry_mCherry_Sig 1.00000 0.00000 0.50075 1.00000 316
numSamples 350 177 437 316

Mann-Whitney U Test, adjusted p values

Maximum Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 1.00000 1.00000 350
mCherry 0.00000 1.00000 0.00000 0.00000 177
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 1.00000 437
EGFP+mCherry_mCherry_Sig 1.00000 0.00000 1.00000 1.00000 316
numSamples 350 177 437 316

Diffrence between means

Maximum Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 1.10338 0.08022 0.04077 350
mCherry 1.10338 0.00000 1.18360 1.06261 177
EGFP+mCherry_EGFP_Sig 0.08022 1.18360 0.00000 0.12099 437
EGFP+mCherry_mCherry_Sig 0.04077 1.06261 0.12099 0.00000 316
numSamples 350 177 437 316

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 3.933e-01 5.586e-01 3.430e-01 3.889e-01 350
mCherry 5.586e-01 7.238e-01 5.076e-01 5.534e-01 177
EGFP+mCherry_EGFP_Sig 3.430e-01 5.076e-01 2.922e-01 3.377e-01 437
EGFP+mCherry_mCherry_Sig 3.889e-01 5.534e-01 3.377e-01 3.830e-01 316
numSamples 350 177 437 316

ttest. adjusted p values

Maximum Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.18653 0.00060 94
mCherry 0.00000 1.00000 0.00000 0.00235 115
EGFP+mCherry_EGFP_Sig 0.18653 0.00000 1.00000 0.00466 155
EGFP+mCherry_mCherry_Sig 0.00060 0.00235 0.00466 1.00000 165
numSamples 94 115 155 165

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.00000 0.00000 94
mCherry 0.00000 1.00000 0.00000 0.00000 115
EGFP+mCherry_EGFP_Sig 0.00000 0.00000 1.00000 0.14747 155
EGFP+mCherry_mCherry_Sig 0.00000 0.00000 0.14747 1.00000 165
numSamples 94 115 155 165

Diffrence between means

Maximum Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 1.06064 0.20717 0.57656 94
mCherry 1.06064 0.00000 0.85347 0.48408 115
EGFP+mCherry_EGFP_Sig 0.20717 0.85347 0.00000 0.36939 155
EGFP+mCherry_mCherry_Sig 0.57656 0.48408 0.36939 0.00000 165
numSamples 94 115 155 165

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 5.766e-01 5.529e-01 4.526e-01 5.622e-01 94
mCherry 5.529e-01 5.275e-01 4.295e-01 5.312e-01 115
EGFP+mCherry_EGFP_Sig 4.526e-01 4.295e-01 3.287e-01 4.376e-01 155
EGFP+mCherry_mCherry_Sig 5.622e-01 5.312e-01 4.376e-01 5.192e-01 165
numSamples 94 115 155 165

Here are the figures side by side

Following is the violin graph representing the distribution of maximums

Slope

ttest. adjusted p values

Slope Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 1.00000 0.32824 444
mCherry 0.00000 1.00000 0.00000 0.00000 292
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.24350 592
EGFP+mCherry_mCherry_Sig 0.32824 0.00000 0.24350 1.00000 481
numSamples 444 292 592 481

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.16985 0.00233 444
mCherry 0.00000 1.00000 0.00000 0.00000 292
EGFP+mCherry_EGFP_Sig 0.16985 0.00000 1.00000 0.16985 592
EGFP+mCherry_mCherry_Sig 0.00233 0.00000 0.16985 1.00000 481
numSamples 444 292 592 481

Diffrence between means

Slope Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.33792 0.00414 0.06295 444
mCherry 0.33792 0.00000 0.33378 0.27497 292
EGFP+mCherry_EGFP_Sig 0.00414 0.33378 0.00000 0.05881 592
EGFP+mCherry_mCherry_Sig 0.06295 0.27497 0.05881 0.00000 481
numSamples 444 292 592 481

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.838e-01 2.077e-01 1.501e-01 1.624e-01 444
mCherry 2.077e-01 2.296e-01 1.724e-01 1.845e-01 292
EGFP+mCherry_EGFP_Sig 1.501e-01 1.724e-01 1.152e-01 1.273e-01 592
EGFP+mCherry_mCherry_Sig 1.624e-01 1.845e-01 1.273e-01 1.394e-01 481
numSamples 444 292 592 481

ttest. adjusted p values

Slope Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 1.00000 0.74068 350
mCherry 0.00000 1.00000 0.00000 0.00007 177
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.30740 437
EGFP+mCherry_mCherry_Sig 0.74068 0.00007 0.30740 1.00000 316
numSamples 350 177 437 316

Mann-Whitney U Test, adjusted p values

Slope Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.87603 0.07350 350
mCherry 0.00000 1.00000 0.00000 0.00007 177
EGFP+mCherry_EGFP_Sig 0.87603 0.00000 1.00000 0.23812 437
EGFP+mCherry_mCherry_Sig 0.07350 0.00007 0.23812 1.00000 316
numSamples 350 177 437 316

Diffrence between means

Slope Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.36749 0.01922 0.04977 350
mCherry 0.36749 0.00000 0.38671 0.31772 177
EGFP+mCherry_EGFP_Sig 0.01922 0.38671 0.00000 0.06898 437
EGFP+mCherry_mCherry_Sig 0.04977 0.31772 0.06898 0.00000 316
numSamples 350 177 437 316

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 2.190e-01 2.732e-01 1.806e-01 2.017e-01 350
mCherry 2.732e-01 3.219e-01 2.309e-01 2.508e-01 177
EGFP+mCherry_EGFP_Sig 1.806e-01 2.309e-01 1.400e-01 1.601e-01 437
EGFP+mCherry_mCherry_Sig 2.017e-01 2.508e-01 1.601e-01 1.799e-01 316
numSamples 350 177 437 316

ttest. adjusted p values

Slope Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.19840 0.03740 94
mCherry 0.00000 1.00000 0.00045 0.00847 115
EGFP+mCherry_EGFP_Sig 0.19840 0.00045 1.00000 0.48787 155
EGFP+mCherry_mCherry_Sig 0.03740 0.00847 0.48787 1.00000 165
numSamples 94 115 155 165

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.01138 0.00027 94
mCherry 0.00000 1.00000 0.00005 0.00053 115
EGFP+mCherry_EGFP_Sig 0.01138 0.00005 1.00000 0.44683 155
EGFP+mCherry_mCherry_Sig 0.00027 0.00053 0.44683 1.00000 165
numSamples 94 115 155 165

Diffrence between means

Slope Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.39234 0.11135 0.17093 94
mCherry 0.39234 0.00000 0.28099 0.22141 115
EGFP+mCherry_EGFP_Sig 0.11135 0.28099 0.00000 0.05958 155
EGFP+mCherry_mCherry_Sig 0.17093 0.22141 0.05958 0.00000 165
numSamples 94 115 155 165

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 2.845e-01 2.961e-01 2.393e-01 2.520e-01 94
mCherry 2.961e-01 3.025e-01 2.486e-01 2.586e-01 115
EGFP+mCherry_EGFP_Sig 2.393e-01 2.486e-01 1.935e-01 2.048e-01 155
EGFP+mCherry_mCherry_Sig 2.520e-01 2.586e-01 2.048e-01 2.148e-01 165
numSamples 94 115 155 165

Here are the figures side by side

Following is the violin graph representing the distribution of slopes

Midpoint

ttest. adjusted p values

Midpoint Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.12480 0.00000 0.03458 444
mCherry 0.12480 1.00000 0.00000 0.82158 292
EGFP+mCherry_EGFP_Sig 0.00000 0.00000 1.00000 0.00003 592
EGFP+mCherry_mCherry_Sig 0.03458 0.82158 0.00003 1.00000 481
numSamples 444 292 592 481

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00007 0.00085 0.03425 444
mCherry 0.00007 1.00000 0.00000 0.00310 292
EGFP+mCherry_EGFP_Sig 0.00085 0.00000 1.00000 0.00000 592
EGFP+mCherry_mCherry_Sig 0.03425 0.00310 0.00000 1.00000 481
numSamples 444 292 592 481

Diffrence between means

Midpoint Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.60106 1.82376 0.78454 444
mCherry 0.60106 0.00000 1.22270 0.18348 292
EGFP+mCherry_EGFP_Sig 1.82376 1.22270 0.00000 1.03922 592
EGFP+mCherry_mCherry_Sig 0.78454 0.18348 1.03922 0.00000 481
numSamples 444 292 592 481

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.318e+00 1.223e+00 1.048e+00 1.141e+00 444
mCherry 1.223e+00 9.831e-01 8.947e-01 9.912e-01 292
EGFP+mCherry_EGFP_Sig 1.048e+00 8.947e-01 7.623e-01 8.550e-01 592
EGFP+mCherry_mCherry_Sig 1.141e+00 9.912e-01 8.550e-01 9.476e-01 481
numSamples 444 292 592 481

ttest. adjusted p values

Midpoint Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.68435 0.00010 0.16690 350
mCherry 0.68435 1.00000 0.00025 0.55510 177
EGFP+mCherry_EGFP_Sig 0.00010 0.00025 1.00000 0.00513 437
EGFP+mCherry_mCherry_Sig 0.16690 0.55510 0.00513 1.00000 316
numSamples 350 177 437 316

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.01968 0.00965 350
mCherry 0.00000 1.00000 0.00000 0.01172 177
EGFP+mCherry_EGFP_Sig 0.01968 0.00000 1.00000 0.00000 437
EGFP+mCherry_mCherry_Sig 0.00965 0.01172 0.00000 1.00000 316
numSamples 350 177 437 316

Diffrence between means

Midpoint Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.26847 1.33495 0.57221 350
mCherry 0.26847 0.00000 1.06648 0.30374 177
EGFP+mCherry_EGFP_Sig 1.33495 1.06648 0.00000 0.76274 437
EGFP+mCherry_mCherry_Sig 0.57221 0.30374 0.76274 0.00000 316
numSamples 350 177 437 316

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.278e+00 1.283e+00 1.036e+00 1.135e+00 350
mCherry 1.283e+00 1.068e+00 9.604e-01 1.034e+00 177
EGFP+mCherry_EGFP_Sig 1.036e+00 9.604e-01 7.762e-01 8.634e-01 437
EGFP+mCherry_mCherry_Sig 1.135e+00 1.034e+00 8.634e-01 9.472e-01 316
numSamples 350 177 437 316

ttest. adjusted p values

Midpoint Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00025 0.00000 0.00083 94
mCherry 0.00025 1.00000 0.16604 0.98853 115
EGFP+mCherry_EGFP_Sig 0.00000 0.16604 1.00000 0.07333 155
EGFP+mCherry_mCherry_Sig 0.00083 0.98853 0.07333 1.00000 165
numSamples 94 115 155 165

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.04636 0.00010 0.02435 94
mCherry 0.04636 1.00000 0.00080 0.47015 115
EGFP+mCherry_EGFP_Sig 0.00010 0.00080 1.00000 0.01927 155
EGFP+mCherry_mCherry_Sig 0.02435 0.47015 0.01927 1.00000 165
numSamples 94 115 155 165

Diffrence between means

Midpoint Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 3.18925 4.06122 2.91003 94
mCherry 3.18925 0.00000 0.87196 0.27922 115
EGFP+mCherry_EGFP_Sig 4.06122 0.87196 0.00000 1.15119 155
EGFP+mCherry_mCherry_Sig 2.91003 0.27922 1.15119 0.00000 165
numSamples 94 115 155 165

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 3.450e+00 2.684e+00 2.642e+00 2.710e+00 94
mCherry 2.684e+00 1.799e+00 1.835e+00 1.935e+00 115
EGFP+mCherry_EGFP_Sig 2.642e+00 1.835e+00 1.827e+00 1.905e+00 155
EGFP+mCherry_mCherry_Sig 2.710e+00 1.935e+00 1.905e+00 1.973e+00 165
numSamples 94 115 155 165

Here are the figures side by side

Following is the violin graph representing the distribution of midpoints

Infection Time

ttest. adjusted p values

infection time Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.72374 0.14470 0.14470 444
mCherry 0.72374 1.00000 0.00090 0.00090 292
EGFP+mCherry_EGFP_Sig 0.14470 0.00090 1.00000 1.00000 592
EGFP+mCherry_mCherry_Sig 0.14470 0.00090 1.00000 1.00000 481
numSamples 444 292 592 481

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00123 1.00000 1.00000 444
mCherry 0.00123 1.00000 0.00000 0.00005 292
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 1.00000 592
EGFP+mCherry_mCherry_Sig 1.00000 0.00005 1.00000 1.00000 481
numSamples 444 292 592 481

Diffrence between means

infection time Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.12772 0.24116 0.25833 444
mCherry 0.12772 0.00000 0.36887 0.38605 292
EGFP+mCherry_EGFP_Sig 0.24116 0.36887 0.00000 0.01718 592
EGFP+mCherry_mCherry_Sig 0.25833 0.38605 0.01718 0.00000 481
numSamples 444 292 592 481

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 5.834e-01 5.339e-01 4.417e-01 4.574e-01 444
mCherry 5.339e-01 4.126e-01 3.514e-01 3.553e-01 292
EGFP+mCherry_EGFP_Sig 4.417e-01 3.514e-01 2.815e-01 2.896e-01 592
EGFP+mCherry_mCherry_Sig 4.574e-01 3.553e-01 2.896e-01 2.958e-01 481
numSamples 444 292 592 481

ttest. adjusted p values

infection time Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.01520 0.92167 0.27823 350
mCherry 0.01520 1.00000 0.00390 0.00060 177
EGFP+mCherry_EGFP_Sig 0.92167 0.00390 1.00000 0.53160 437
EGFP+mCherry_mCherry_Sig 0.27823 0.00060 0.53160 1.00000 316
numSamples 350 177 437 316

Mann-Whitney U Test, adjusted p values

infection time Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00927 0.81377 0.22945 350
mCherry 0.00927 1.00000 0.00030 0.00000 177
EGFP+mCherry_EGFP_Sig 0.81377 0.00030 1.00000 0.45876 437
EGFP+mCherry_mCherry_Sig 0.22945 0.00000 0.45876 1.00000 316
numSamples 350 177 437 316

Diffrence between means

infection time Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.39169 0.05580 0.15732 350
mCherry 0.39169 0.00000 0.44749 0.54901 177
EGFP+mCherry_EGFP_Sig 0.05580 0.44749 0.00000 0.10152 437
EGFP+mCherry_mCherry_Sig 0.15732 0.54901 0.10152 0.00000 316
numSamples 350 177 437 316

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 3.657e-01 4.835e-01 3.383e-01 3.571e-01 350
mCherry 4.835e-01 5.975e-01 4.570e-01 4.718e-01 177
EGFP+mCherry_EGFP_Sig 3.383e-01 4.570e-01 3.107e-01 3.305e-01 437
EGFP+mCherry_mCherry_Sig 3.571e-01 4.718e-01 3.305e-01 3.464e-01 316
numSamples 350 177 437 316

ttest. adjusted p values

infection time Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.48498 0.35005 0.48498 94
mCherry 0.48498 1.00000 0.35005 0.66190 115
EGFP+mCherry_EGFP_Sig 0.35005 0.35005 1.00000 0.48498 155
EGFP+mCherry_mCherry_Sig 0.48498 0.66190 0.48498 1.00000 165
numSamples 94 115 155 165

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00290 0.42002 0.18457 94
mCherry 0.00290 1.00000 0.00290 0.31258 115
EGFP+mCherry_EGFP_Sig 0.42002 0.00290 1.00000 0.25048 155
EGFP+mCherry_mCherry_Sig 0.18457 0.31258 0.25048 1.00000 165
numSamples 94 115 155 165

Diffrence between means

infection time Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.57133 0.88491 0.69414 94
mCherry 0.57133 0.00000 0.31358 0.12282 115
EGFP+mCherry_EGFP_Sig 0.88491 0.31358 0.00000 0.19077 155
EGFP+mCherry_mCherry_Sig 0.69414 0.12282 0.19077 0.00000 165
numSamples 94 115 155 165

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 2.398e+00 1.657e+00 1.600e+00 1.569e+00 94
mCherry 1.657e+00 4.931e-01 5.778e-01 5.379e-01 115
EGFP+mCherry_EGFP_Sig 1.600e+00 5.778e-01 6.231e-01 5.882e-01 155
EGFP+mCherry_mCherry_Sig 1.569e+00 5.379e-01 5.882e-01 5.529e-01 165
numSamples 94 115 155 165

Here are the figures side by side

Following is the violin graph representing the distribution of infection time

Start point

ttest. adjusted p values

Start point (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.09816 0.00000 0.09816 444
mCherry 0.09816 1.00000 0.00017 1.00000 292
EGFP+mCherry_EGFP_Sig 0.00000 0.00017 1.00000 0.00015 592
EGFP+mCherry_mCherry_Sig 0.09816 1.00000 0.00015 1.00000 481
numSamples 444 292 592 481

Mann-Whitney U Test, adjusted p values

Start point (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00007 0.01768 0.00423 444
mCherry 0.00007 1.00000 0.00000 0.04057 292
EGFP+mCherry_EGFP_Sig 0.01768 0.00000 1.00000 0.00000 592
EGFP+mCherry_mCherry_Sig 0.00423 0.04057 0.00000 1.00000 481
numSamples 444 292 592 481

Diffrence between means

Start point (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.66492 1.70318 0.65537 444
mCherry 0.66492 0.00000 1.03826 0.00955 292
EGFP+mCherry_EGFP_Sig 1.70318 1.03826 0.00000 1.04781 592
EGFP+mCherry_mCherry_Sig 0.65537 0.00955 1.04781 0.00000 481
numSamples 444 292 592 481

effect size needed for Power = 0.95 and sig.level = 0.05

Start point (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.382e+00 1.276e+00 1.100e+00 1.193e+00 444
mCherry 1.276e+00 1.013e+00 9.327e-01 1.027e+00 292
EGFP+mCherry_EGFP_Sig 1.100e+00 9.327e-01 8.024e-01 8.939e-01 592
EGFP+mCherry_mCherry_Sig 1.193e+00 1.027e+00 8.939e-01 9.854e-01 481
numSamples 444 292 592 481

ttest. adjusted p values

start point Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.34298 0.00030 0.33513 350
mCherry 0.34298 1.00000 0.00523 1.00000 177
EGFP+mCherry_EGFP_Sig 0.00030 0.00523 1.00000 0.00523 437
EGFP+mCherry_mCherry_Sig 0.33513 1.00000 0.00523 1.00000 316
numSamples 350 177 437 316

Mann-Whitney U Test, adjusted p values

start point Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00003 0.11150 0.00060 350
mCherry 0.00003 1.00000 0.00000 0.21007 177
EGFP+mCherry_EGFP_Sig 0.11150 0.00000 1.00000 0.00000 437
EGFP+mCherry_mCherry_Sig 0.00060 0.21007 0.00000 1.00000 316
numSamples 350 177 437 316

Diffrence between means

start point Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.46432 1.30705 0.49355 350
mCherry 0.46432 0.00000 0.84274 0.02924 177
EGFP+mCherry_EGFP_Sig 1.30705 0.84274 0.00000 0.81350 437
EGFP+mCherry_mCherry_Sig 0.49355 0.02924 0.81350 0.00000 316
numSamples 350 177 437 316

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.358e+00 1.345e+00 1.099e+00 1.198e+00 350
mCherry 1.345e+00 1.075e+00 9.943e-01 1.063e+00 177
EGFP+mCherry_EGFP_Sig 1.099e+00 9.943e-01 8.202e-01 9.062e-01 437
EGFP+mCherry_mCherry_Sig 1.198e+00 1.063e+00 9.062e-01 9.878e-01 316
numSamples 350 177 437 316

ttest. adjusted p values

start point Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00210 0.00020 0.00723 94
mCherry 0.00210 1.00000 0.34554 0.88690 115
EGFP+mCherry_EGFP_Sig 0.00020 0.34554 1.00000 0.13937 155
EGFP+mCherry_mCherry_Sig 0.00723 0.88690 0.13937 1.00000 165
numSamples 94 115 155 165

Mann-Whitney U Test, adjusted p values

start point Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.29690 0.00485 0.13153 94
mCherry 0.29690 1.00000 0.00485 0.45577 115
EGFP+mCherry_EGFP_Sig 0.00485 0.00485 1.00000 0.11453 155
EGFP+mCherry_mCherry_Sig 0.13153 0.45577 0.11453 1.00000 165
numSamples 94 115 155 165

Diffrence between means

start point Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 2.90359 3.61876 2.56296 94
mCherry 2.90359 0.00000 0.71517 0.34063 115
EGFP+mCherry_EGFP_Sig 3.61876 0.71517 0.00000 1.05580 155
EGFP+mCherry_mCherry_Sig 2.56296 0.34063 1.05580 0.00000 165
numSamples 94 115 155 165

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 3.668e+00 2.839e+00 2.796e+00 2.863e+00 94
mCherry 2.839e+00 1.874e+00 1.917e+00 2.019e+00 115
EGFP+mCherry_EGFP_Sig 2.796e+00 1.917e+00 1.912e+00 1.992e+00 155
EGFP+mCherry_mCherry_Sig 2.863e+00 2.019e+00 1.992e+00 2.062e+00 165
numSamples 94 115 155 165

Here are the figures side by side

Following is the violin graph representing the distribution of start point

The Aim

This document includes double variable figures associated with samples. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases. For each graph we plot density and point versions.

The investigated parameter couples are

1.) Midpoint vs Slope 2.) Slope vs Maximum 3.) Midpoint vs Maximum

Midpoint vs Slope

Slope vs Maximum

Midpoint vs Maximum